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Reconstructing Biofabrics, Mineral Fabrics, and Channel Architecture in 2D & 3D within Incipient Microbialites

A Case Study From Cone Pool, Little Hot Creek, California
Publication in prep

Microbialites record interactions between the biosphere and the geosphere for ~3.5 billion years and are the oldest fossils of life on Earth. Our ability to interpret these trace fossils hinges on our ability to properly interpret their texture (texture also provides critical context for interpreting their geochemistry). However, we don't completely understand which actions by microbial ecosystems or specific bacteria/archaea cause the mineral textures to form which end up preserved in the fossil record. As a result of an unreliable ability to interpret textures, texture itself can be considered an "unpromising" biosignature. If, however, our ability to interpret textures in fossils improved, the promise of texture as a biosignature might change in an exciting way.

I use fluorescently labelled embedded coring to reconstruct textures of microbes, minerals, and channel architecture within incipient microbialites in 2 & 3 dimensions on micron scales. I use a suite of microscopy techniques including epifluorescence and petrographic microscopy, coupled with microCT scanning at a voxel size of 2.1 microns. We have applied this technique to microbialites forming in Cone Pool, a Hot spring in Little Hot Creek, which is the subject of an in prep publication. However, we also use FLEC on other targets with support from the NASA Early Career Collaboration Award (thrombolites), the USC Wrigley Institute on Catalina Island (intertidal marine cyanobacterial mats), the Cnidarian Evolutionary Ecology lab in USC Marine and Environmental Biology (live corals), and Inyo National Forest (looking at arthropod taphonomy). These are ongoing projects and collaborations. 

Recent oral presentations about this project at AGU (Washington DC), GSA (Anaheim), Goldschmidt, and Life and Planet (London)

Bacterial Endolithic Activity as a Texture-Altering Force in Marine and Fresh Carbonate-forming Environments

Active study at Wrigley Marine Institute, Catalina Island & Little Hot Creek

This project focuses on the rate and nature of endolithic microboring in fresh and marine environments. Microboring in carbonate shells and sediments has been documented in marine environments since the 1800s. We investigate the potential of endolithic microboring to transform calcium carbonate fabrics entering the fossil record and are creating a semi-quantitative method of describing endolithic microboring progression with the help of two awesome USC undergraduate students! 

Recently presented at the 2025 Geobiology Conference (Banff)


 

Where and how quickly does calcium carbonate precipitate in environments with heterogeneous biofabrics?

Active study at Little Hot Creek and in collaboration with the Natural History Museum of Los Angeles County Department of Mineral Sciences

Spike_Exp.jpg

Can't say much about this now - but hopefully soon

(If you wanted to locate where CaCO3 was precipitating on micron scales... and connect that process spatially with microbial biofabrics, how might you approach that challenge without breaking the bank? More soon at some summer conferences on the success of our strategy :)  )

Geochemical Traces of Lithification Processes preserved in Stromatolites from the Archean to modern

Active study at USC and the Natural History Museum of Los Angeles County Department of Mineral Sciences

We investigate which microbial metabolisms may have significantly impacted stromatolite lithification informed by trends in marine geochemistry from Archean to Phanerozoic. 

Project presented at Goldschmidt 2023 (Lyon) and Life and Planet 2023 (London)


 

Research/travel funding, fellowships, etc.

 

​​​​2025

GSA Travel Award

Paleontological Association Conference Travel Award

Life and Planet Conference Travel Award

Mineralogy Society of America Graduate Student Research Grant 

Heidemarie Johnson Scholarship from the Paleontological Society 

Society for Sedimentary Geology Graduate Student Research Grant 

USC Graduate Student Government Professional Development Grant

 

​2024

USC Wrigley Fellowship 

NASA SCoPE SciAct Affiliate Grant 

USC Earth Sciences Research Award 

Life and Planet Conference Travel Award 

GSA Graduate Student Research Grant ​

 

2023

USC Graduate Student Government Professional Development Grant 

GSA Travel Award 

NASA Early Career Collaboration Award ​

 

2022

Sigma Xi Graduate Student Grant in Aid of Research 

National Science Foundation GRFP ​(Geobiology)

 

2021

Society for Sedimentary Geology Graduate Student Research Grant Gretchen L. Blechschmidt GSA Graduate Student Research Grant

​

2020

Honorable Mention - National Science Foundation GRFP (Microbiology)

Dewey Stuit Travel Award for Undergraduate Research

​

Iowa Center for Research by Undergraduates Research Fellowship

received three times: 2020, 2019, 2018

​

2019

University of Iowa Honors Program Travel Award

​

 

Total Value of Funds Earned: $186,385 USD

Publications

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Cassady V.C., Petryshyn V.A., Bernhard, J.M., Celestian, A., Berelson, W.M., Bottjer, D.J., Corsetti F.A.

Deconvolution of Texture Formation in Dendrolitic Conical Microbialites via FLEC (Flourescently Labeled Embedded Coring): Little Hot Creek, California [in prep]

 

Cribb, A. T., Formoso, K. K., Woolley, C. H., Beech, J., Brophy, S., Byrne, P., Cassady, V. C., Godbold, A.L., Larina, E., Maxeiner, P., Wu, Y.H., Corsetti, A.F., Bottjer, D. J. (2023). Contrasting terrestrial and marine ecospace dynamics after the end-Triassic mass extinction event. Proceedings of the Royal Society B, 290(2012), 20232232.

 

Gu VW, Cho E, Thompson DT, Cassady VC, Borcherding N, Koch KE, Wu VT, Lorenzen AW, Kulak MV, Williams T, Zhang W, Weigel RJ., 2021. AP-2gamma is Required for Maintenance of Mammary Stem Cells. 

Stem Cell Reports, Jan, 2021.

 

Franke CM, Wu VT, Grimm BG, Cassady VC, White J, Weigel RJ, Kulak MV., 2019. TFAP2C regulates carbonic anhydrase XII in human breast cancer. 2019. Oncogene, 1-12. doi:10.1038/s41388-019-1062-5.

 

De Andrade JP, Lorenzen AW, Wu VT, Bogachek MV, Park JM, Gu VW, Sevenich CM, Cassady VC, Beck AC, Kulak MV, Robinson RA, Lal G, Weigel RJ., 2017. Targeting the SUMO pathway as a novel treatment for anaplastic thyroid cancer. Oncotarget, 8(70), doi: 10.18632/oncotarget.21954.

website in progress; more details to come

Contact me -

I am not active on social media. My USC email is the best way to reach me. 

Tori Cassady

University of Southern California

Earth Sciences Department

Natural History Museum of 

Los Angeles County

Mineral Sciences Department

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